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1997

Greenspan DL, Connolly DC, Wu R, Lei RY, Vogelstein JT, Kim YT, Mok JE, Muñoz N, Bosch FX, Shah K et al.. 1997. Loss of FHIT expression in cervical carcinoma cell lines and primary tumors.. Cancer Research. 57:4692–4698.

2000

Agresti A, Booth J, Hobert J, Caffo B. 2000. Random-effects modeling of categorical response data. Sociological Methodology. 30:27–80.

Agresti A, Caffo B. 2000. Simple and effective confidence intervals for proportions and differences of proportions result from adding two successes and two failures. The American Statistician. 54:280–288.

2001

Caffo B, Booth J. 2001. A Markov chain Monte Carlo algorithm for approximating exact conditional probabilities. Journal of Computational and Graphical Statistics. 10:730–745.

Hartzel J, Agresti A, Caffo B. 2001. Multinomial logit random effects models. Statistical Modelling. 1:81.

2002

Caffo B, Booth J, Davison A. 2002. Empirical supremum rejection sampling. Biometrika. 89:745–754.

Crainiceanu C, Ruppert D, Stedinger JR, Behr CT. 2002. Improving MCMC Mixing for a GLMM Describing Pathogen Concentrations in Water Supplies. Case Studies in Bayesian Statistics, Volume V (Lecture Notes in Statistics Vol. 162). :207–221.

Agresti A, Caffo B. 2002. Measures of relative model fit. Computational Statistics and Data Analysis. 39:127–136.

Booth J, Caffo B. 2002. Unequal sampling for Monte Carlo EM algorithms. Computational Statistics and Data Analysis. 39:261–270.

2003

Caffo B, Booth J. 2003. Monte Carlo conditional inference for log-linear and logistic models: a survey of current methodology. Statistical Methods in Medical Research. 12:109.

van Schaik G, Schukken YH, Crainiceanu C, Muskens J, VanLeeuwen JA. 2003. Prevalence estimates for paratuberculosis adjusted for test variability using Bayesian analysis. Prev. Vet. Med.. 60:281–295.

Yacoub E, Duong TQ, De Moortele V, Lindquist MA, Adriany G, Kim S-G, Uğurbil K, Hu X, others. 2003. Spin-echo fMRI in humans using high spatial resolutions and high magnetic fields. Magnetic resonance in medicine. 49:655–664.

2004

Agresti A, Caffo B, Ohman-Strickland P. 2004. Examples in which misspecification of a random effects distribution reduces efficiency, and possible remedies. Computational Statistics and Data Analysis. 47:639–653.

Crainiceanu C, Ruppert D. 2004. Likelihood Ratio Tests in Linear Mixed Models with One Variance Component. Journal of the Royal Statistical Society, Series B: Statistical Methodology. 66:165–185.

Carroll RJ, Ruppert D, Crainiceanu C, Tosteson TD, Karagas MR. 2004. Nonlinear and Nonparametric Regression and Instrumental Variables. Journal of the American Statistical Association. 99:736–750.

Crainiceanu C, Ruppert D. 2004. Restricted Likelihood Ratio Tests in Nonparametric Longitudinal Models. Statistica Sinica. 14:713–729.

2005

Caffo B, Jank W, Jones G. 2005. Ascent-Based Monte Carlo EM. Journal of the Royal Statistical Society, Series B. 67:235–252.

Sinai A, Bowers CW, Crainiceanu C, Boatman D, Gordon B, Lesser RP, Lenz FA, Crone NE. 2005. Electrocorticographic high gamma activity versus electrical cortical stimulation mapping of naming. Brain. 128:1556–1570.

Crainiceanu C, Ruppert D, Claeskens G, Wand MP. 2005. Exact Likelihood Ratio Tests for Penalised Splines. Biometrika. 92:91–103.

2006

Zhang L, Samet J, Caffo B, Punjabi N. 2006. Cigarette smoking and nocturnal sleep architecture. American Journal of Epidemiology. 164:529.

Caffo B. 2006. Exact Hypothesis Tests for Log-linear Models with exactLoglinTest. Journal of Statistical Software. 17:1–17.

Bassett S, Yousem D, Cristinzio C, Kusevic I, Yassa M, Caffo B, Zeger S. 2006. Familial risk for Alzheimer's disease alters fMRI activation patterns. Brain, PMCID: PMC2744898. 129:1229–1239.

Jones G, Haran M, Caffo B, Neath R. 2006. Fixed-width output analysis for Markov chain Monte Carlo. Journal of the American Statistical Association. 101:1537–1547.

Ndovi T, Choi L, Caffo B, Parsons T, Baker S, Zhao M, Rohde C, Hendrix C. 2006. Quantitative assessment of seminal vesicle and prostate drug concentrations by use of a noninvasive method. Clinical Pharmacology & Therapeutics. 80:146–158.

Gimenez O, Crainiceanu C, Barbraud C, Jenouvrier S, Morgan BJT. 2006. Semiparametric Regression in Capture\textndashrecapture Modeling. Biometrics. 62:691–698.

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