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Caffo B, An M, Rohde C. 2007. Flexible random intercept models for binary outcomes using mixtures of normals. Computational Statistics and Data Analysis, PMCID: PMC2031853. 51:5220–5235.

Caffo B, Swihart B, Crainiceanu C, Laffan A, Punjabi N. 2009. An Overview of Observational Sleep Research with Application to Sleep State Transitioning. Chance. 22:10–15.

Caffo B, Booth J. 2003. Monte Carlo conditional inference for log-linear and logistic models: a survey of current methodology. Statistical Methods in Medical Research. 12:109.

Caffo B, Chen S, Stewart W, Bolla K, Yousem D, Davatzikos C, Schwartz B. 2007. Are Brain Volumes based on Magnetic Resonance Imaging Mediators of the Associations of Cumulative Lead Dose with Cognitive Function? American Journal of Epidemiology. 167:429–437.

Caffo B, Booth J, Davison A. 2002. Empirical supremum rejection sampling. Biometrika. 89:745–754.

Caffo B, Diener-West M, Punjabi N, Samet J. 2011. A novel approach to prediction of mild sleep disorders in a population-based sample: the Sleep Heart Health Study. Sleep, PMCID: PMC2982734. 33:1641–1648.

Caffo B, Griswold M. 2006. A user-friendly tutorial on link-probit-normal models. The American Statistician. 60:139–145.

Caffo B, Booth J. 2001. A Markov chain Monte Carlo algorithm for approximating exact conditional probabilities. Journal of Computational and Graphical Statistics. 10:730–745.

Caffo B, Swihart B, Crainiceanu C, Laffan A, Punjabi N. 2009. An overview of observational sleep research with application to sleep stage transitioning. Chance, PMCID: PMC2800358. 22:10–15.

Caffo B, Crainiceanu C, Verduzco G, Joel S, Mostofsky S, Bassett S, Pekar J. 2010. Two-stage decompositions for the analysis of functional connectivity for fMRI with application to Alzheimer’s disease risk. Neuroimage. 51:1140–1149.

Caffo B. 2006. Exact Hypothesis Tests for Log-linear Models with exactLoglinTest. Journal of Statistical Software. 17:1–17.

Caffo B, Crainiceanu C, Deng L, Hendrix C. 2008. A Case Study in Pharmacologic Colon Imaging Using Principal Curves in Single-Photon Emission Computed Tomography. Journal of the American Statistical Association. 103:1470–1480.

Caffo B, Dongmei L, Scharpf R, Parmigiani G. 2008. Likelihood Estimation of Conjugacy Relationships in Linear Models with Applications to High-Throughput Genomics. International Journal of Biostatistics, PMCID: PMC2827886. 5

Caffo B, Jank W, Jones G. 2005. Ascent-Based Monte Carlo EM. Journal of the Royal Statistical Society, Series B. 67:235–252.

Cao Y, Caffo B, Fuchs E, Lee L, Du Y, Li L, Bakshi R, Khan W, Wahl R, Grohskopf L et al.. 2012. Quantification of the spatial distribution of rectally-applied surrogates for microbicide and semen in colon with SPECT imaging. Accepted in the British Journal of Clinical Pharmacology.

Cao Y, Ndovi T, Parsons T, Guidos A, Caffo B, Hendrix C. 2007. Effect of semen sampling frequency on seminal antiretroviral drug concentration. Clinical Pharmacology & Therapeutics. 83:848–856.

Cao Y, Caffo B, Choi L, Radebaugh C, Fuchs E, Hendrix C. 2008. Noninvasive Quantitation of Drug Concentration in Prostate and Seminal Vesicles: Improvement and Validation With Desipramine and Aspirin. The Journal of Clinical Pharmacology. 48:176-183.

Carroll RJ, Ruppert D, Crainiceanu C, Tosteson TD, Karagas MR. 2004. Nonlinear and Nonparametric Regression and Instrumental Variables. Journal of the American Statistical Association. 99:736–750.

Chen S, Wang C, Eberly L, Caffo B, Schwartz B. 2009. Adaptive control of the false discovery rate in voxel-based morphometry. Human Brain Mapping, NIHMSID: 316414. 30:2304–2311.

Cheng Y-J, Crainiceanu C. 2009. Cox Models With Smooth Functional Effect of Covariates Measured With Error. Journal of the American Statistical Association. 104:1144–1154.

Choi L, Caffo B, Rohde C. 2008. A survey of the likelihood approach to bioequivalence trials. Statistics in Medicine, PMCID: PMC2778077. 27:4874–4894.

Choi L, Caffo B, Rohde C, Ndovi T, Hendrix C. 2008. A mechanistic latent variable model for estimating drug concentrations in the male genital tract: A case study in drug kinetics. Statistics in Medicine, PMCID: PMC2763330. 27:2697–2714.

Choi L, Crainiceanu CM, Caffo BS. 2013. Practical recommendations for population PK studies with sampling time errors.. Eur J Clin Pharmacol. 69(12):2055-64.

Choi L, Caffo B, Rohde C. 2007. Optimal sampling times in bioequivalence studies using a simulated annealing algorithm. Statistics and Computing. 17:337–347.

Choi L, Caffo B, Kohli U, Pandharipande P, Kurnik D, Ely E, Stein C. 2011. A Bayesian hierarchical nonlinear mixture model in the presence of artifactual outliers in a population pharmacokinetic study. Journal of Pharmacokinetics and Pharmacodynamics. 38:613-636.

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