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U

Laffan A, Caffo B, Swihart B, Punjabi N. 2010. Utility of sleep stage transitions in assessing sleep continuity. Sleep, PMCID: PMC2982738. 33:1681.

Caffo B, Griswold M. 2006. A user-friendly tutorial on link-probit-normal models. The American Statistician. 60:139–145.

Booth J, Caffo B. 2002. Unequal sampling for Monte Carlo EM algorithms. Computational Statistics and Data Analysis. 39:261–270.

T

Caffo B, Crainiceanu C, Verduzco G, Joel S, Mostofsky S, Bassett S, Pekar J. 2010. Two-stage decompositions for the analysis of functional connectivity for fMRI with application to Alzheimer’s disease risk. Neuroimage. 51:1140–1149.

He X, Caffo B, Frey E. 2008. Toward Realistic and Practical Ideal Observer (IO) Estimation for the Optimization of Medical Imaging Systems. IEEE Transactions on Medical Imaging, PMCID: PMC2739397. 27:1535–1543.

S

Choi L, Caffo B, Rohde C. 2008. A survey of the likelihood approach to bioequivalence trials. Statistics in Medicine, PMCID: PMC2778077. 27:4874–4894.

Punjabi N, Caffo B, Goodwin J, Gottlieb D, Newman A, O'Connor G, Rapoport D, Redline S, Resnick H, Robbins J et al.. 2009. Sleep-disordered Breathing and Mortality: a Prospective Cohort Study. PLOS Medicine, PMCID: PMC2722083. 6

Aurora RN, Crainiceanu C, Caffo B, Punjabi N. 2012. Sleep-Disordered breathing and caffeine consumption: results of a community-based study. Accepted in Chest.

Agresti A, Caffo B. 2000. Simple and effective confidence intervals for proportions and differences of proportions result from adding two successes and two failures. The American Statistician. 54:280–288.

R

Shiee N, Bazin P, Zackowski K, Farrell S, Harrison D, Newsome S, Ratchford J, Caffo B, Calabresi P, Pham D et al.. 2012. Revisiting Brain Atrophy and Its Relationship to Disability in Multiple Sclerosis. PLoS ONE. 7:e37049.

Joel S, Caffo B, van Zijl P, Pekar J. 2011. On the relationship between seed-based and ICA-based measures of functional connectivity. Magnetic Resonance in Medicine. 66:644–657.

Schwartz B, Chen S, Caffo B, Stewart W, Bolla K, Yousem D, Davatzikos C. 2007. Relations of brain volumes with cognitive function in males 45 years and older with past lead exposure. Neuroimage, PMCID: PMC2038986. 37:633–641.

Wu H, Caffo B, Jaffee H, Feinberg A, Irizarry R. 2010. Redefining CpG Islands Using a Hidden Markov Models. Biostatistics, PMCID: PMC2883304. 11:499–514.

Agresti A, Booth J, Hobert J, Caffo B. 2000. Random-effects modeling of categorical response data. Sociological Methodology. 30:27–80.

Q

Ndovi T, Choi L, Caffo B, Parsons T, Baker S, Zhao M, Rohde C, Hendrix C. 2006. Quantitative assessment of seminal vesicle and prostate drug concentrations by use of a noninvasive method. Clinical Pharmacology & Therapeutics. 80:146–158.

Shou H, Eloyan A, Lee S, Zipunnikov V, Crainiceanu AN, Nebel NB, Caffo B, Lindquist MA, Crainiceanu CM. 2013. Quantifying the reliability of image replication studies: the image intraclass correlation coefficient (I2C2).. Cogn Affect Behav Neurosci. 13(4):714-24.

Boatman-Reich D, Franaszczuk PJ, Korzeniewska A, Caffo B, Ritzl E, Colwell S, Crone N. 2010. Quantifying Auditory Event-Related Responses in Multichannel Human Intracranial Recordings. Invited submission to Frontiers in Computational Neuroscience, PMCID: PMC2859880. 4:1–17.

Cao Y, Caffo B, Fuchs E, Lee L, Du Y, Li L, Bakshi R, Khan W, Wahl R, Grohskopf L et al.. 2012. Quantification of the spatial distribution of rectally-applied surrogates for microbicide and semen in colon with SPECT imaging. Accepted in the British Journal of Clinical Pharmacology.

Nazarian S, Bluemke D, Wagner K, Zviman M, Turkbey E, Caffo B, Shehata M, Edwards D, Butcher B, Calkins H et al.. 2010. QRS Prolongation in Myotonic Muscular Dystrophy and Diffuse Fibrosis on Cardiac Magnetic Resonance. Magnetic Resonance in Medicine, PMCID: PMC3034129. 64:107–114.

P

Nazarian S, Hansford R, Roguin A, Goldsher D, Zviman M, Lardo A, Caffo B, Frick K, Kraut M, Kamel I et al.. 2011. Prospective study to assess the safety of a protocol for magnetic resonance imaging of patients with implanted cardiac devices. Annals of Interal Medicine. 155:415–424.

O'Connor G, Caffo B, Newman A, Quan S, Rapoport D, Redline S, Resnick H, Samet J, Shahar E. 2009. Prospective Study of Sleep-disordered Breathing and Hypertension: The Sleep Heart Health Study. American Journal of Respiratory and Critical Care Medicine, PMCID: PMC2695498. 179:1159–1164.

Zhang L, Samet J, Caffo B, Bankman I, Punjabi N. 2008. Power Spectral Analysis of EEG Activity During Sleep in Cigarette Smokers. Chest. 133:427–432.

Li X, Caffo B, Scharfstein D. 2007. On the potential for ill logic with logically defined outcomes. Biostatistics. 8:800.

Shinohara R, Crainiceanu C, Caffo B, Gaitan M, Reich D. 2011. Population-wide principal component-based quantification of blood-brain-barrier dynamics in multiple sclerosis. Neuroimage, PMCID: PMC3138825. 57:1430–1446.

Crainiceanu C, Caffo B, Luo S, Zipunnikov V, Punjabi N. 2011. Population value decomposition, a framework for the analysis of image populations. Journal of the American Statistical Association, with discussion and rejoinder. 106:775-790.

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