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Journal Article

Lindquist MA, Loh JM, Atlas L, Wager TD. 2009. Modeling the Hemodynamic Response Function in fMRI: Efficiency, Bias and Mis-modeling. NeuroImage. 45:S187-S198.

Lindquist MA, Waugh C, Wager TD. 2007. Modeling state-related fMRI activity using change-point theory. NeuroImage. 35:1125–1141.

Staicu AM, Crainiceanu C, Reich DS, Ruppert D. 2011. Modeling Functional Data with Spatially Heterogeneous Shape Characteristics. Biometrics.

Dominici F, Wang C, Crainiceanu C, Parmigiani G. 2008. Model selection and health effect estimation in environmental epidemiology. Epidemiology. 19:558–560.

Swihart B, Caffo B, Crainiceanu C, Punjabi NM. 2012. Mixed effect Poisson log-linear models for clinical and epidemiological sleep hypnogram data. Stat Med. 31:855–870.

Mondul AM, Caffo B, Platz EA. 2011. Minimal detection bias in the inverse association between statin drug use and advanced prostate cancer risk: A simulation study. Cancer Epidemiology, PMCID: PMC3142317. 35:e6-e11.

Saidha S, Sotirchos ES, Ibrahim MA, Crainiceanu CM, Gelfand JM, Sepah YJ, Ratchford JN, Oh J, Seigo MA, Newsome SD et al.. 2012. Microcystic macular oedema, thickness of the inner nuclear layer of the retina, and disease characteristics in multiple sclerosis: a retrospective study.. Lancet Neurol. 11(11):963-72.

Wager TD, Lindquist MA, Kaplan L. 2007. Meta-analysis of functional neuroimaging data: current and future directions. Social Cognitive and Affective Neuroscience. 2:150–158.

Gardner RM, Nyland JF, Evans SL, Wang SB, Doyle KM, Crainiceanu C, Silbergeld EK. 2009. Mercury induces an unopposed inflammatory response in human peripheral blood mononuclear cells in vitro. Environ. Health Perspect.. 117:1932–1938.

Massie A, Caffo B, Gentry S, Hall E, Axelrod D, Lentine K, Schnitzler M, Gheorghian A, Salvalaggio P, Segev D. 2011. MELD Exceptions and Rates of Waiting List Outcomes. American Journal of Transplantation. 11:2362–2371.

Choi L, Caffo B, Rohde C, Ndovi T, Hendrix C. 2008. A mechanistic latent variable model for estimating drug concentrations in the male genital tract: A case study in drug kinetics. Statistics in Medicine, PMCID: PMC2763330. 27:2697–2714.

Agresti A, Caffo B. 2002. Measures of relative model fit. Computational Statistics and Data Analysis. 39:127–136.

Caffo B, Booth J. 2001. A Markov chain Monte Carlo algorithm for approximating exact conditional probabilities. Journal of Computational and Graphical Statistics. 10:730–745.

Greenspan DL, Connolly DC, Wu R, Lei RY, Vogelstein JT, Kim YT, Mok JE, Muñoz N, Bosch FX, Shah K et al.. 1997. Loss of FHIT expression in cervical carcinoma cell lines and primary tumors.. Cancer Research. 57:4692–4698.

Gertheiss J, Goldsmith J, Crainiceanu C, Greven S. 2013. Longitudinal scalar-on-functions regression with application to tractography data.. Biostatistics. 14(3):447-61.

Goldsmith J, Crainiceanu C, Caffo B, Reich D. 2012. Longitudinal penalized functional regression for cognitive outcomes on neuronal tract measurements. Journal of the Royal Statistical Society Series C. :453–469.

Greven S, Crainiceanu C, Caffo B, Reich D. 2010. Longitudinal functional principal components analysis. Electronic Journal of Statistics, PMCID: PMC3131008. 4:1022-1054.

Harrison D, Caffo B, Shiee N, Farrell, J Bazin P, Farrell S, Ratchford J, Calabresi P, Reich D. 2011. Longitudinal changes in diffusion-tensor-based quantitative MRI in multiple sclerosis. Neurology, PMCID: PMC3030233. 76:179–186.

Shinohara R, Crainiceanu C, Caffo B, Reich DS. 2011. Longitudinal Analysis of Spatiotemporal Processes: A Case Study of Dynamic Contrast-Enhanced Magnetic Resonance in Multiple Sclerosis. Johns Hopkins University, Dept. of Biostatistics Working Papers. :231.

Lindquist MA, McKeague IW. 2009. Logistic Regression with Brownian-like Predictors. Journal of the American Statistical Association. 104:1575-1585.

Eloyan A, Crainiceanu CM, Caffo BS. 2013. Likelihood-based population independent component analysis.. Biostatistics. 14(3):514-27.

Crainiceanu C, Ruppert D. 2004. Likelihood Ratio Tests in Linear Mixed Models with One Variance Component. Journal of the Royal Statistical Society, Series B: Statistical Methodology. 66:165–185.

Caffo B, Dongmei L, Scharpf R, Parmigiani G. 2008. Likelihood Estimation of Conjugacy Relationships in Linear Models with Applications to High-Throughput Genomics. International Journal of Biostatistics, PMCID: PMC2827886. 5

Swihart B, Caffo B, James B, Strand M, Schwartz B, Punjabi N. 2010. Lasagna plots: A Saucy alternative to spaghetti plots. Epidemiology. 21:621–625.

Leyva FJ, Bakshi RP, Fuchs EJ, Li L, Caffo BS, Goldsmith AJ, Ventuneac A, Carballo-Diéguez A, Du Y, Leal JP et al.. 2013. Isoosmolar enemas demonstrate preferential gastrointestinal distribution, safety, and acceptability compared with hyperosmolar and hypoosmolar enemas as a potential delivery vehicle for rectal microbicides.. AIDS Res Hum Retroviruses. 29(11):1487-95.

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