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Dominici F, Wang C, Crainiceanu C, Parmigiani G. 2008. Model selection and health effect estimation in environmental epidemiology. Epidemiology. 19:558–560.

Staicu AM, Crainiceanu C, Reich DS, Ruppert D. 2011. Modeling Functional Data with Spatially Heterogeneous Shape Characteristics. Biometrics.

Lindquist MA, Waugh C, Wager TD. 2007. Modeling state-related fMRI activity using change-point theory. NeuroImage. 35:1125–1141.

Lindquist MA, Loh JM, Atlas L, Wager TD. 2009. Modeling the Hemodynamic Response Function in fMRI: Efficiency, Bias and Mis-modeling. NeuroImage. 45:S187-S198.

Swihart B, Caffo B, Crainiceanu C, Punjabi N. 2012. Models of sleep hypnograms scalable to epidemiological studies. Tentatively accepted in Statistics in Medicine.

Su S, Caffo B, Garrett-Mayer E, Bassett S. 2009. Modified test statistics by inter-voxel variance shrinkage with an application to fMRI. Biostatistics, NIHMSID: 316409. 10:219-227.

Caffo B, Booth J. 2003. Monte Carlo conditional inference for log-linear and logistic models: a survey of current methodology. Statistical Methods in Medical Research. 12:109.

Barber A, Srinivasan P, Joel S, Caffo B, Pekar J, Mostofsky S. 2012. Motor "dexterity"?: evidence that left hemisphere lateralization of motor circuit connectivity is associated with better motor performance in children Cerebral Cortex.

Bai J, Goldsmith J, Caffo B, Glass T, Crainiceanu C. 2012. Movelets: A dictionary of movement. Electronic Journal of Statistics. 6:559-578.

Bai J, Goldsmith J, Caffo B, Glass TA, Crainiceanu CM. 2012. Movelets: A dictionary of movement.. Electron J Stat. 6:559-578.

Ozturk A, Smith S, Gordon-Lipkin E, Harrison D, Shiee N, Pham D, Caffo B, Calabresi P, Reich D. 2010. MRI of the Corpus Callosum in Multiple Sclerosis: Association with Disability. Multiple Sclerosis, PMCID: PMC2820126. 16:166–177.

Di C, Crainiceanu C, Caffo B, Punjabi N. 2009. Multilevel functional principal component analysis. Annals of Applied Statistics, PMCID: PMC2835171. 3:458-488.

Zipunnikov V, Caffo B, Crainiceanu C, Yousem D, Davatzikos C, Schwartz B. 2011. Multilevel functional principal component analysis for high-dimensional data. Journal of Computational and Graphical Statistics, NIMHID: 306063. 20:852–873.

Di C, Crainiceanu CM, Jank WS. 2014. Multilevel sparse functional principal component analysis.. Stat. 3(1):126-143.

Hartzel J, Agresti A, Caffo B. 2001. Multinomial logit random effects models. Statistical Modelling. 1:81.

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Shmuelof L, Yang J, Caffo B, Mazzoni P, Krakauer JW. 2014. The neural correlates of learned motor acuity.. J Neurophysiol. 112(4):971-80.

Coughlin JM, Wang Y, Munro CA, Ma S, Yue C, Chen S, Airan R, Kim PK, Adams AV, Garcia C et al.. 2014. Neuroinflammation and brain atrophy in former NFL players: An in vivo multimodal imaging pilot study.. Neurobiol Dis. 74C:58-65.

Paninski L, Ahmadian Y, Gil D, Shinsuke F, Rahnama K, Michael R, Vogelstein JT, Wu W, Ferreira D G, Koyama S et al.. 2010. A new look at state-space models for neural data.. Journal of computational neuroscience. 29:107–26.

Ndovi T, Parsons T, Choi L, Caffo B, Rohde C, Hendrix C. 2007. A new method to estimate quantitatively seminal vesicle and prostate gland contributions to ejaculate. British Journal of Clinical Pharmacology, PMCID: PMC2203235. 63:404-420.

Cao Y, Caffo B, Choi L, Radebaugh C, Fuchs E, Hendrix C. 2008. Noninvasive Quantitation of Drug Concentration in Prostate and Seminal Vesicles: Improvement and Validation With Desipramine and Aspirin. The Journal of Clinical Pharmacology. 48:176-183.

Carroll RJ, Ruppert D, Crainiceanu C, Tosteson TD, Karagas MR. 2004. Nonlinear and Nonparametric Regression and Instrumental Variables. Journal of the American Statistical Association. 99:736–750.

Goldsmith J, Caffo B, Crainiceanu C, Reich D, Du Y, Hendrix C. 2011. Nonlinear tube-fitting for the analysis of anatomical and functional structures. Annals of Applied Statistics, PMCID: PMC3119905. 5:337-363.

Crainiceanu C. 2007. Nonparametric Regression Methods for Longitudinal Data Analysis. Mixed-effects Modeling Approaches: Hulin Wu and Jin-Ting Zhang. Journal of the American Statistical Association. 102:761–761.

Crainiceanu C, Caffo B, Di C, Punjabi N. 2009. Nonparametric signal extraction and measurement error in the analysis of electroencephalographic activity during sleep. Journal of the American Statistical Association, PMCID: PMC2802498. 104:541–555.

Crainiceanu C, Caffo B, Di C-Z, Punjabi NM. 2009. Nonparametric Signal Extraction and Measurement Error in the Analysis of Electroencephalographic Activity During Sleep. Journal of the American Statistical Association. 104:541–555.

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