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Caffo B, Booth J. 2001. A Markov chain Monte Carlo algorithm for approximating exact conditional probabilities. Journal of Computational and Graphical Statistics. 10:730–745.

Caffo B, Booth J, Davison A. 2002. Empirical supremum rejection sampling. Biometrika. 89:745–754.

Caffo B, Booth J. 2003. Monte Carlo conditional inference for log-linear and logistic models: a survey of current methodology. Statistical Methods in Medical Research. 12:109.

Caffo B, Jank W, Jones G. 2005. Ascent-Based Monte Carlo EM. Journal of the Royal Statistical Society, Series B. 67:235–252.

Caffo B. 2006. Exact Hypothesis Tests for Log-linear Models with exactLoglinTest. Journal of Statistical Software. 17:1–17.

Caffo B, Griswold M. 2006. A user-friendly tutorial on link-probit-normal models. The American Statistician. 60:139–145.

Caffo B, Chen S, Stewart W, Bolla K, Yousem D, Davatzikos C, Schwartz B. 2007. Are Brain Volumes based on Magnetic Resonance Imaging Mediators of the Associations of Cumulative Lead Dose with Cognitive Function? American Journal of Epidemiology. 167:429–437.

Caffo B, An M, Rohde C. 2007. Flexible random intercept models for binary outcomes using mixtures of normals. Computational Statistics and Data Analysis, PMCID: PMC2031853. 51:5220–5235.

Caffo B, Dongmei L, Scharpf R, Parmigiani G. 2008. Likelihood Estimation of Conjugacy Relationships in Linear Models with Applications to High-Throughput Genomics. International Journal of Biostatistics, PMCID: PMC2827886. 5

Caffo B, Swihart B, Crainiceanu C, Laffan A, Punjabi N. 2009. An overview of observational sleep research with application to sleep stage transitioning. Chance, PMCID: PMC2800358. 22:10–15.

Caffo B, Diener-West M, Punjabi N, Samet J. 2011. A novel approach to prediction of mild sleep disorders in a population-based sample: the Sleep Heart Health Study. Sleep, PMCID: PMC2982734. 33:1641–1648.

Caffo B, Crainiceanu C, Verduzco G, Joel S, Mostofsky S, Bassett S, Pekar J. 2010. Two-stage decompositions for the analysis of functional connectivity for fMRI with application to Alzheimer’s disease risk. Neuroimage. 51:1140–1149.

Caffo B, Swihart B, Crainiceanu C, Laffan A, Punjabi N. 2009. An Overview of Observational Sleep Research with Application to Sleep State Transitioning. Chance. 22:10–15.

Caffo B, Crainiceanu C, Deng L, Hendrix C. 2008. A Case Study in Pharmacologic Colon Imaging Using Principal Curves in Single-Photon Emission Computed Tomography. Journal of the American Statistical Association. 103:1470–1480.