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2000

Agresti A, Booth J, Hobert J, Caffo B. 2000. Random-effects modeling of categorical response data. Sociological Methodology. 30:27–80.

Agresti A, Caffo B. 2000. Simple and effective confidence intervals for proportions and differences of proportions result from adding two successes and two failures. The American Statistician. 54:280–288.

2001

Caffo B, Booth J. 2001. A Markov chain Monte Carlo algorithm for approximating exact conditional probabilities. Journal of Computational and Graphical Statistics. 10:730–745.

Hartzel J, Agresti A, Caffo B. 2001. Multinomial logit random effects models. Statistical Modelling. 1:81.

2002

Caffo B, Booth J, Davison A. 2002. Empirical supremum rejection sampling. Biometrika. 89:745–754.

Agresti A, Caffo B. 2002. Measures of relative model fit. Computational Statistics and Data Analysis. 39:127–136.

Booth J, Caffo B. 2002. Unequal sampling for Monte Carlo EM algorithms. Computational Statistics and Data Analysis. 39:261–270.

2003

Caffo B, Booth J. 2003. Monte Carlo conditional inference for log-linear and logistic models: a survey of current methodology. Statistical Methods in Medical Research. 12:109.

2004

Agresti A, Caffo B, Ohman-Strickland P. 2004. Examples in which misspecification of a random effects distribution reduces efficiency, and possible remedies. Computational Statistics and Data Analysis. 47:639–653.

2005

Caffo B, Jank W, Jones G. 2005. Ascent-Based Monte Carlo EM. Journal of the Royal Statistical Society, Series B. 67:235–252.

2006

Zhang L, Samet J, Caffo B, Punjabi N. 2006. Cigarette smoking and nocturnal sleep architecture. American Journal of Epidemiology. 164:529.

Caffo B. 2006. Exact Hypothesis Tests for Log-linear Models with exactLoglinTest. Journal of Statistical Software. 17:1–17.

Bassett S, Yousem D, Cristinzio C, Kusevic I, Yassa M, Caffo B, Zeger S. 2006. Familial risk for Alzheimer's disease alters fMRI activation patterns. Brain, PMCID: PMC2744898. 129:1229–1239.

Jones G, Haran M, Caffo B, Neath R. 2006. Fixed-width output analysis for Markov chain Monte Carlo. Journal of the American Statistical Association. 101:1537–1547.

Ndovi T, Choi L, Caffo B, Parsons T, Baker S, Zhao M, Rohde C, Hendrix C. 2006. Quantitative assessment of seminal vesicle and prostate drug concentrations by use of a noninvasive method. Clinical Pharmacology & Therapeutics. 80:146–158.

Caffo B, Griswold M. 2006. A user-friendly tutorial on link-probit-normal models. The American Statistician. 60:139–145.

2007

Caffo B, Chen S, Stewart W, Bolla K, Yousem D, Davatzikos C, Schwartz B. 2007. Are Brain Volumes based on Magnetic Resonance Imaging Mediators of the Associations of Cumulative Lead Dose with Cognitive Function? American Journal of Epidemiology. 167:429–437.

Cao Y, Ndovi T, Parsons T, Guidos A, Caffo B, Hendrix C. 2007. Effect of semen sampling frequency on seminal antiretroviral drug concentration. Clinical Pharmacology & Therapeutics. 83:848–856.

Caffo B, An M, Rohde C. 2007. Flexible random intercept models for binary outcomes using mixtures of normals. Computational Statistics and Data Analysis, PMCID: PMC2031853. 51:5220–5235.

Ndovi T, Parsons T, Choi L, Caffo B, Rohde C, Hendrix C. 2007. A new method to estimate quantitatively seminal vesicle and prostate gland contributions to ejaculate. British Journal of Clinical Pharmacology, PMCID: PMC2203235. 63:404-420.

Choi L, Caffo B, Rohde C. 2007. Optimal sampling times in bioequivalence studies using a simulated annealing algorithm. Statistics and Computing. 17:337–347.

Li X, Caffo B, Scharfstein D. 2007. On the potential for ill logic with logically defined outcomes. Biostatistics. 8:800.

Schwartz B, Chen S, Caffo B, Stewart W, Bolla K, Yousem D, Davatzikos C. 2007. Relations of brain volumes with cognitive function in males 45 years and older with past lead exposure. Neuroimage, PMCID: PMC2038986. 37:633–641.

2008

Scharfstein D, Ryea J, Caffo B. 2008. Accounting for within-patient correlation in assessing relative sensitivity of an adjunctive diagnostic test: Application to lung cancer. Statistics in Medicine. 27:2110–2126.

Bowman F, Caffo B, Bassett S, Kilts C. 2008. A Bayesian hierarchical framework for spatial modeling of fMRI data. NeuroImage, PMCID: PMC2134321. 39:146–156.

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