JIST
JIST is an image processing software that runs through MIPAV.
Download MIPAV here:http://mipav.cit.nih.gov
Download JIST here: http://www.nitrc.org/projects/jist
Here is a link to a JIST layouts that we use for longitudinal coregistration of multimodal structural MRI images:
https://dl.dropboxusercontent.com/u/36711424/JIST_layouts.zip